Report your bugs here - if someone else has already mentioned the same bug, just add on to their post with as much info as possible to make the hunting easier.
Not really a bug but rather a small cosmetic annoyance. The contents of expanded folders in the sidebar are indented too much to the right. It looks weird and takes too much horizontal space. Compare Pedia with other applications. For example, the Finder in List View. Notice Pedia's indentation reserves space for the collapse/expand arrow of nested folders, whereas Finder doesn't.
It's a backwards compatibility problem with Leopard and Snow Leopard. To keep the source listing and folder indentations looking nice for all supported OS Xs, this is the best work-around we found.